PPG-Derived Digital Biomarker Developed for Peripheral Artery Disease Detection

A research team at the University of California, San Diego has developed a machine learning-based screening approach for peripheral artery disease (PAD) that uses a light-based technology called photoplethysmography (PPG) that can measure changes in blood volume in tissue. The researchers reported that short-duration PPG recordings in a patient’s toe, analyzed by machine learning models, identified PAD with a high degree of accuracy and may provide the basis for a scalable digital screening tool that could eventually be deployed through smartphones, pulse oximeters, and wearable devices. The team’s findings are published in npj Digital Medicine.

“PPG works by shining a light into tissue, in our case, the toe,” said co-first author Ava J. Fascetti, a PhD student in the digital health technology lab of senior author Edward J. Wang, PhD. “A photosensor measures how much light is reflected back, allowing us to detect tiny changes in blood volume: what we call the PPG signal.”

PAD is caused by plaque buildup in arteries that restricts blood flow, particularly to the legs and lower extremities. The disease affects an estimated 12 million Americans and 200 million adults worldwide. PAD substantially increases the risk of limb loss and major cardiovascular events, yet many patients are not diagnosed until later stages of disease progression. The researchers noted that the condition disproportionately affects underserved populations and is underdiagnosed in part because the current standard diagnostic, ankle-brachial index (ABI), requires specialized equipment, staff, and clinic visits.

“There exists a glaring unmet clinical need to develop technology to meet the demands of modern practice,” the researchers wrote. Further, ABI testing, introduced about 60 years ago, has has remained largely unchanged and has long-standing barriers to widespread use in primary care and under-resourced settings.

The current study originated from discussions between co-first author Mattheus Ramsis, MD, and assistant professor of medicine and medical director of cardiology informatics, and co-author Elsie G. Ross, MD, an associate professor of surgery in vascular and endovascular surgery, who noted that vascular labs conducting ABI testing often also collected toe PPG waveforms.

“The light-bulb went off for me at that moment,” Ramsis said.

PPG works by shining light into tissue and measuring backscattered light associated with blood volume changes. PPG has previously been used to identify cardiovascular and metabolic conditions including diabetes and atrial fibrillation. Earlier research efforts to use PPG for PAD detection had relied on small datasets, long recordings and less interpretable deep-learning approaches.

For their approach, the UCSD team assembled a dataset containing more than 10,000 toe PPG recordings from more than 3,500 patients who underwent ABI testing at UC San Diego Health between 2020 and 2025. Using these data, the researchers extracted 78 waveform features from the PPG signals that correlated significantly with ABI measurements. Those features were then used to train an explainable support vector machine model designed to identify PAD from PPG data alone.

Ramsis said the model correctly distinguished PAD cases approximately 83% of the time using only PPG data, compared with roughly 60% to 65% performance typically achieved using clinical risk-factor assessments alone. Incorporating smoking status of the patients further improved the performance of the new method.

Importantly, the model performed consistently across Black, Hispanic, and White patient populations, and among patients with diabetes, coronary artery disease, and end-stage renal disease. The researchers also reported similar performance across two UC San Diego Health campuses that used different equipment and staff.

The investigators noted that the physiologic basis for their findings align with established vascular biology. In PAD, reduced blood flow and arterial stiffness alter the morphology of PPG waveforms. Healthier patients demonstrated steeper systolic upstrokes and narrower waveform widths, while patients with PAD showed more dampened signals.

“Our findings support the existence of a reproducible PPG-derived digital biomarker that captures peripheral vascular pathophysiology relevant to ABI-defined PAD,” the researchers wrote.

The researchers said they don’t think their new model should replace ABI testing. Instead, they envision PPG screening as a complementary tool that could serve to identify patients earlier that might need further vascular evaluation.

The team said prospective deployment studies are already underway to evaluate performance in clinical settings and across additional reference standards, including toe pressure measurements, ultrasound imaging, and angiography. Additional research will also gauge performance in consumer-grade environments, including smartphones and wearable devices, and assess how the screening tool functions in broader patient populations outside specialized vascular clinics.

“If we can catch PAD early enough to prevent a limb amputation, that would be the ultimate impact: preserving limb function, reducing mortality, and addressing barriers in underserved populations,” Ramsis said.

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[Comment] Integrated proteomic and immune subtyping: a two-tier framework for biomarker-guided therapy in high-grade serous ovarian cancer

Ovarian cancer remains one of the deadliest gynaecological malignancies, with high-grade serous ovarian cancer (HGSOC) accounting for the majority of deaths.1,2 Despite advances in surgery and chemotherapy, most patients are diagnosed at an advanced stage, and the 5-year survival rate has stubbornly remained below 50% for decades.3 A major obstacle is that the traditional FIGO staging system, while useful for prognosis, does not explain why patients within the same stage often follow dramatically different clinical trajectories.

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1H-MRS brain metabolites as biomarkers of high-altitude hypobaric hypoxia following mild traumatic brain injury in mice

Introduction and objectivePopulations at high altitude (HA) face a higher incidence and severity of traumatic brain injury (TBI). This pilot study utilized longitudinal 1H-MRS to identify neurochemical biomarkers of HA adaptation and the subsequent metabolic response to mild TBI (mTBI).MethodsMale C57BL/6J mice were exposed to simulated HA (5,000 m) or sea level (SL) for 12 weeks. Following adaptation, a unilateral mTBI was induced via closed head injury (CHI). Mice were then monitored for an additional 2 weeks at HA (total duration of 14 weeks). In vivo1H-MRS spectra (7 T) were collected from the frontal cortex, hippocampi, and cerebellum at weeks 0, 4, 12 to assess HA adaptation. Following the CHI, subsequent measurements were collected at week 12 (post-injury) and week 14 to monitor longitudinal neurochemical responses to the mTBI.ResultsChronic HA exposure induced significant reductions in myo-inositol (Ins) and total choline (tCho) in the hippocampus, establishing a baseline of metabolic fragility that sensitized the brain to subsequent traumatic insult. Post-mTBI, the HA group exhibited a profound “metabolic crisis,” characterized by significantly lower tCho and failed recovery of total N-acetylaspartate (tNAA) compared to SL controls. Total creatine (tCr) was the most acutely affected metabolite, underscoring a depletion of the bioenergetic reserve.ConclusionChronic hypobaric hypoxia fundamentally alters baseline brain metabolism and impairs the neurochemical recovery from mTBI. These findings suggest that standard recovery protocols may be insufficient for HA-adapted populations and highlight 1H-MRS as a critical tool for detecting “invisible” metabolic vulnerability in extreme environments.

CSF Platform Enables Near Real-Time Monitoring of Multiple Biomarkers

Scientists have developed a sensor platform that can monitor cerebrospinal fluid (CSF) in intensive care unit patients, overcoming major delays in diagnosis associated with current testing methods. A study published today in Science Translational Medicine reports that the NeuroSense platform can provide near real-time readings of four key biomarkers every 27 minutes, with results accurately reflecting standard clinical measurements. 

In neurological intensive care units, external ventricular drainage (EVD) systems are routinely used to temporarily assist patients with drainage of excess CSF, manage postoperative complications and monitor intracranial pressure. However, the use of these devices carries a high infection risk, with rates reaching up to 20% of patients. 

Delayed diagnosis of these infections can lead to severe meningitis, neural damage, cognitive impairment, permanent disability, or even death. However, current testing methods are labor-intensive and require sending samples to external laboratories for biomarker analysis and manual inspection. This limits testing to every one to two days, significantly delaying clinical decisions that can be critical for preventing severe complications. 

“To address these limitations, we developed NeuroSense, a multiplexed sensing platform that integrates with standard external ventricular drainage systems to enable near real-time monitoring of key CSF biomarkers, including glucose, lactate, pH, and flow rate, that are essential for detecting infection and drain dysfunction,” write the study authors. 

The NeuroSense platform employs aptamer-based biosensors to detect glucose and lactate levels in CSF, which are key markers of bacterial infections. These types of biosensors are more stable and have a longer shelf life than conventional enzymatic biosensors, ensuring the platform can consistently and accurately track these markers for the entire time EVD systems remain in place, typically between five to 10 days. 

Furthermore, an impedance-based sensor measures CSF flow rate to monitor for potential catheter obstructions or incorrect EVD settings, while a polydopamine sensor keeps track of pH changes, which can indicate acidosis, hemorrhage, infection, or a disrupted blood-brain barrier.

The platform’s performance was evaluated in a small-scale study that recruited six patients with EVDs hospitalized in the intensive care unit. Every four hours, readings from the NeuroSense platform were compared with those from standard testing methods, revealing a strong correlation between the sensor platform and clinical reference measurements.

A survey of the healthcare providers and clinicians involved in the study further showed that most participants found the platform easy to use, as it integrates with standard EVD systems routinely used in the intensive care setting.

Going forward, the researchers plan on further improving the performance of the pH sensor and continue developing the platform to comply with regulatory requirements for running large-scale clinical studies and eventually making the platform available to healthcare providers. 

“Beyond infection detection and EVD assessment, NeuroSense enables higher temporal-resolution tracking of CSF biomarkers and flow dynamics, supporting earlier recognition of evolving trends that may be missed with intermittent sampling,” write the researchers. “Although the current system measures glucose, lactate, pH, and flow, the platform is modular and can accommodate additional sensors in future iterations. By providing near-bedside, actionable insights into patients’ neurological health, NeuroSense has strong potential to enhance clinical decision-making and improve patient care.”

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Aberrant Splicing Patterns Could Predict Therapy Response in mRCC

Transcriptomic analysis of more than 100 metastatic renal cell carcinomas (mRCC) has revealed key differences in aberrant alternative gene splicing events between treatment responders and nonresponders that could aid prognostication in future.

“In the near term, these findings could help guide treatment selection by identifying patients more likely to respond to targeted therapies or standard immuno-oncology regimens,” said Patrick Pirrotte, PhD, director of the Integrated Mass Spectrometry Shared Resource at TGen and City of Hope, associate professor in TGen’s Early Detection and Prevention Division, and senior author of the paper.

“Longer term, splicing-derived antigens could provide a foundation for more personalized adoptive immunotherapy strategies tailored to the molecular features of an individual patient’s tumor,” he told Inside Precision Medicine.

Pirrotte explained that “alternative splicing [AS] is a fundamental transcriptional mechanism that expands proteomic diversity in normal cells, but aberrant splicing is increasingly recognized as a feature of cancer that can contribute to tumorigenesis, progression, and metastasis.”

His group, and collaborators, have previously demonstrated that aberrant splicing could act as a broadly relevant biomarker across different malignancies, including ovarian cancer and sarcomatoid renal cell carcinoma, but its diagnostic and predictive potential in mRCC remained largely unexplored.

To address this, Pirrotte and team conducted a retrospective analysis on tumor samples from 101 patients with mRCC who received immune checkpoint inhibitor (n=91) and/or targeted (n=77) therapies. Response rates to each of the therapies were 63% and 77%, respectively.

The researchers report in the Journal for ImmunoTherapy of Cancer that they identified 10 AS events that were specific to mRCC. Six of these were intron retention events and four were exon skipping events.

Differential AS analysis identified 461 slicing events that differed between responders and non-responders to immune checkpoint inhibitors and 253 events that differed between targeted therapy responders and non-responders. In both cases, more than 70% of novel AS events among responders involved intron retention.

“Intron retention was the predominant alternative splicing event observed in patients who responded well to therapy,” observed Pirrotte.

“Mechanistically, intron retention occurs when intronic sequences that are normally removed during RNA processing are retained in the mature transcript. This can generate novel amino acid sequences and, in some cases, tumor-associated antigens derived from aberrant splicing,” he explained. “A high intron-retention burden was associated with an immunogenic tumor microenvironment, marked by adaptive immune activation and enriched antigen processing. In simple terms, these cancer-specific splicing errors may help ‘flag’ tumor cells, making them more visible to the immune system.”

The team then investigated whether differentially spliced sequences shared between the immunotherapy and targeted therapy responder cohorts could potentially act as neoantigenic targets.

This revealed that novel peptide-generating AS events in the genes IFFO1 and ZNF692 were highly expressed among the responders. Both genes are known to play a role in tumorigenesis and metastasis in RCC and colorectal cancer. The researchers note that although the specific impact of AS events within these genes is unclear, the resulting neoantigens could play a role in future treatment approaches.

“It is becoming increasingly feasible to identify splicing-derived neoantigens that could be used in personalized immunotherapy approaches, including adoptive cell therapies such as CAR T-cell or tumor-infiltrating lymphocyte therapies,” said Pirrotte. “These strategies are designed to train or redirect a patient’s immune system to recognize tumor-specific antigen signatures. In this case, the targets would be antigens generated by aberrant splicing events, allowing immune cells to selectively recognize and kill cancer cells.”

Finally, the investigators showed that tumors with higher levels of aberrant splicing were more common among therapy responders than nonresponders. This could potentially be used as a biomarker for treatment response.

“Current biomarkers such as PD-L1 expression and microsatellite instability have shown limited and inconsistent predictive value in mRCC,” said Pirrotte. “In contrast, our study identified a significant association between tumor ‘splicing burden’ (the extent of aberrant splicing) and clinical response to therapy. These findings suggest that the tumor transcriptome, particularly splicing dysregulation, may provide a more informative framework for predicting treatment response and personalizing therapy.”

Before assessment of AS can be implemented in routine clinical practice, the core technologies will need further refinement, including clinically validated RNA sequencing workflows, robust computational pipelines for splicing analysis, and clear regulatory and technical frameworks for using the results to guide treatment decisions or develop biologic therapies.

Pirrotte and team are now assembling validation cohorts to confirm their findings in larger patient populations. They are also expanding their work to other cancer types to determine whether aberrant splicing and splicing-derived antigens represent broadly applicable biomarkers and therapeutic targets.

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Factors Predicting Poor Outcomes in Hypertrophic Cardiomyopathy Uncovered

Five factors predicting death or serious complications in hypertrophic cardiomyopathy, a heart condition where the heart muscle becomes abnormally thick, have been uncovered in a study led by the University of Virginia.

“Hypertrophic cardiomyopathy, with a prevalence of one in 500 in the U.S., is the most frequent cause of sudden cardiac death in young individuals,” explain lead author Christopher Kramer, MD, a researcher at University of Virginia Health, in JAMA.

“Although some patients remain asymptomatic, others develop effort intolerance, exertional angina, progressive heart failure, atrial and ventricular arrhythmias, and sudden cardiac death.”

There is some disagreement about how best to predict risk in patients diagnosed with this condition, which is inherited in 60% of cases, with different factors used for assessment in different places and current guidelines focusing on sudden cardiac death risk and not other serious adverse events such as the risk for heart failure.

This study enrolled 2,698 hypertrophic cardiomyopathy patients from 44 sites across North America and Europe between 2014 and 2017 and followed them for an average of 6.9 years. The participants underwent wide ranging tests on enrollment including cardiac magnetic resonance imaging with core laboratory analysis, genetic testing of 36 cardiomyopathy genes, blood biomarker analysis, and detailed clinical assessments. Patients with pre-existing implantable cardioverter defibrillators, often prescribed to patients with this condition to avert sudden cardiac death, were excluded.

Patients were reviewed once a year by telephone, with an average follow-up time of around seven years. Records were reviewed if events occurred during the study.

Overall, 117 events—death, nonfatal sustained ventricular arrhythmias requiring cardioversion or defibrillation, left ventricular assist device implant or heart transplant—occurred in 104 participants during the follow up period.

Five factors were significant predictors of a poor outcome. These included the extent of scarring on the heart measured by imaging, heart muscle size, and heart chamber size with all three predicting worse outcomes with greater measures. The other two factors were history of heart failure and higher levels of a blood protein marker of heart stress, NT-proBNP.

“Current risk prediction guidelines for hypertrophic cardiomyopathy are imperfect, as they predict only sudden cardiac death, and not heart failure or other fatal and nonfatal cardiac adverse events,” said Kramer in a press statement. “This study is a major advance in that it provides evidence that incorporating these additional assessment methods better predicts risk of adverse outcomes.”

The team plan to continue this work and to develop a risk score as well as to seek external validation from independent databases and researchers using similar measures of risk.

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