Gene Regulation Map Uncovers Heart Failure Targets

Scientists have created the most detailed map to date of single-cell gene regulation in heart failure. Published today in Science, the study integrates multiple layers of genomics data to identify new therapeutic targets for the world’s leading cause of death.

“Our goal is to use this atlas to discover targets that we can act on therapeutically,” said Neil C. Chi, MD, PhD, professor of medicine at UC San Diego School of Medicine. “Right now, one of the biggest limitations in cardiology is not the lack of tools, but the lack of targets. This kind of data changes that.”

While previous genetic studies have uncovered many genetic changes linked to heart failure, more than 85% of them were found in noncoding DNA regions, making it difficult to understand how they contribute to the condition and develop targeted therapeutics. Because of this, treatment options for heart failure remain limited.

“What makes this study unique is the ability to integrate multiple layers of genome regulation in the same cells,” said Bing Ren, PhD, professor emeritus of cellular and molecular medicine at UC San Diego School of Medicine and scientific director and CEO of the New York Genome Center. “These technologies allow us to look beyond which genes are active to understand how the genome is organized and controlled, revealing regulatory elements and interactions that were previously inaccessible.”

The researchers analyzed more than 750,000 individual heart cells from 36 participants with and without heart failure. Results revealed that heart failure is associated with major shifts in cell composition, with a reduction in the number of cardiomyocytes and an increase of fibroblasts and immune cells. In failing hearts, over 10,000 genes showed altered expression patterns and more than 50,000 DNA regions showed changes in chromatin states that altered the ability of proteins to interact with them. 

Compared to other cell types, fibroblasts and cardiomyocytes showed the most extensive remodeling of their gene regulation networks. These cells also showed several distinct cell states as they progressed from healthy to diseased—in the case of fibroblasts, transforming into activated fibroblasts and myofibroblasts that contribute to scarring and fibrosis. 

“These intermediate states are where the disease is actively unfolding,” said Chi. “If we can understand and target those transitions, we may be able to intervene earlier and more effectively.”

Integrating the single-cell atlas with genome-wide association data, the team showed that genetic changes are concentrated in specific regulatory regions active in certain cell types, particularly in cardiomyocytes. These findings suggest that targeting cardiomyocyte genes may be more effective than targeting genes found on other cell types when treating heart disease. 

“This is a higher-order view of disease biology,” said Chi. “Instead of just asking which genes are turned on or off, we’re now understanding how their regulation is controlled across the genome—and that’s where most disease risk actually resides. By connecting genetic risk, gene regulation and cell-specific disease processes, this study provides a blueprint for precision therapies in heart failure. It opens the door to targeting the right mechanisms in the right cells at the right time.”

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Jagged Little Pill: With Merck’s Oral PCSK9 Inhibitor, Does LDL-C Care Change?

The story of PCSK9 is an archetypal chapter from the precision medicine book of successes. It opens with the discovery of rare genetic variants that naturally lower PCSK9 activity, showing how well lowering low-density lipoprotein cholesterol (LDL-C) protects against cardiovascular disease. That discovery leads to a renaissance in lipid management, with monoclonal antibodies, RNA-based therapies, and experimental gene-editing methods to permanently silence the gene. The latest advance in delivering PCSK9-inhibiting therapies is perhaps also the simplest: a pill. 

Last week, the FDA approved Merck’s once-daily oral PCSK9 inhibitor LIPFENDRA (enlicitide), making it the first pill to target one of cardiovascular medicine’s most validated therapeutic pathways. In two pivotal Phase III studies, enlicitide reduced placebo-adjusted LDL-C by as much as 60% in adults with hypercholesterolemia, including those with heterozygous familial hypercholesterolemia (HeFH), when added to diet and exercise.  

Seth S. Martin, MD, professor and preventive cardiologist at Johns Hopkins, believes cheaper, oral PCSK9 inhibition—a 30-day supply of LIPFENDRA costs $315 compared to injectable PCSK9 inhibitors that cost $500-$600 per month—could help expand the use of one of cardiology’s most effective therapeutic strategies.  

“I see oral PCSK9 inhibition as a meaningful advance that can help build on momentum in this regard by expanding the options available to patients and clinicians,” Martin told Inside Precision Medicine. “Having a once-daily oral medication as an option can significantly broaden the use of PCSK9-targeted therapy. The more options we have, the better positioned we are to collaborate with our patients in finding treatment approaches that work and close gaps in care.” 

The approval could solve one of preventive cardiology’s biggest problems: implementing highly effective LDL-lowering therapies. “Atherosclerotic cardiovascular disease (ASCVD) remains the leading cause of death, and elevated LDL-C is one of its most important modifiable drivers,” Martin said. “If we’re going to knock ASCVD off the top of that list, we’ll need to scale up the use of effective LDL-C-lowering therapies to consistently hit LDL-C goals that we set in our 2026 ACC/AHA/Multisociety Dyslipidemia Guideline.” 

Molecular innovation meets medicinal chemistry 

Enlicitide is a macrocyclic peptide that binds PCSK9 with high affinity while remaining orally bioavailable—a feat many researchers once considered unattainable.   

“For years, many medicinal chemists believed it simply wasn’t possible to develop an oral molecule that could inhibit the PCSK9–LDL receptor interaction the way monoclonal antibodies do,” Christie Mitchell Ballantyne, MD, chief of cardiology at Baylor College of Medicine and an investigator in the enlicitide clinical development program, told Inside Precision Medicine. “This isn’t a conventional small molecule. It’s a macrocyclic peptide, and developing it required extraordinary chemistry.”  

The challenge went beyond finding a PCSK9-binding molecule. Ballantyne said it took multiple rounds of innovation to optimize the lead compound for oral absorption, metabolic stability, and scalable manufacturing after screening massive macrocyclic libraries. With these manufacturing advances, which may be as important as molecular design, Merck was able to introduce enlicitide at a lower price than injectable PCSK9 inhibitors and even some oral LDL-lowering therapies by simplifying chemical synthesis, potentially overcoming one of the main barriers to the drug class’s use.  

Two Phase III CORALreef studies supported FDA approval. In the 2,904-patient CORALreef Lipids trial, adults with hypercholesterolemia at high cardiovascular risk had a placebo-adjusted 56% LDL reduction at 24 weeks, increasing to 60% with revised post hoc data handling that excluded biologically implausible baseline LDL-C values. Enlicitide also reduced non-high-density lipoprotein (HDL) cholesterol by 54% and apolipoprotein B by 50%. The 303-patient CORALreef HeFH study produced similarly robust findings, with placebo-adjusted LDL reductions of 59% alongside significant decreases in non-HDL cholesterol and ApoB. 

Overall, Ballantyne said, the Phase III program largely confirmed what decades of PCSK9 biology had led researchers to expect, lining up remarkably well with what has been seen from monoclonal antibodies. 

Karol Watson, MD, PhD, professor of medicine/cardiology at the David Geffen School of Medicine at UCLA and co-director of the UCLA Program in Preventive Cardiology, expects the trial to validate what decades of LDL biology have consistently suggested, while emphasizing that definitive evidence still matters. “Based on everything we’ve learned over the last several decades, I think it’s very reasonable to expect that those LDL reductions will translate into fewer cardiovascular events,” Watson told Inside Precision Medicine. “But we’ll let the outcomes trial give us the definitive answer.” 

For example, although LDL-C is one of medicine’s most extensively validated surrogate biomarkers, regulators appropriately distinguish between lowering cholesterol and demonstrating reductions in heart attacks, strokes, and cardiovascular death. 

 Merck’s ongoing CORALreef Outcomes trial aims to answer that question directly. The study has enrolled more than 14,500 high-risk patients and is evaluating whether enlicitide reduces major cardiovascular events in addition to lowering LDL-C. Ballantyne noted that investigators continue collecting long-term safety and efficacy data through both the outcomes trial and extension studies. 

Making prevention practical 

PCSK9 inhibitors have reduced LDL-C by roughly 60% and lowered cardiovascular events for nearly a decade. Yet despite strong clinical evidence, they remain substantially underused in routine practice. The reasons have been familiar: high initial prices, burdensome insurance requirements, physician inertia, and patient reluctance to begin lifelong injectable therapy for a condition that causes no immediate symptoms.  

“The challenge has never really been whether PCSK9 inhibition works,” Ballantyne said. “These have been excellent drugs. But they’ve had an access problem.” 

For Ballantyne, the promise of enlicitide came through while taking a look at the CORALreef safety data, where findings closely mirrored the placebo. Adverse event-related discontinuation rates were similar across treatment groups, while diarrhea and dizziness occurred infrequently. 

“When I review a placebo-controlled trial, one of the first things I examine is whether patients discontinue therapy more often than placebo,” Ballantyne said. “If discontinuation rates are similar, that’s generally very good news because it tells you patients can tolerate the medication.”  

Watson believes oral therapy addresses one of those barriers by giving physicians another option for patients who hesitate when injections enter the conversation. “Having an oral PCSK9 inhibitor is a really important step forward because it gives us another option for patients who just don’t want an injectable medication,” she said. “Many patients do perfectly well with injections, but for others it’s a real barrier. Sometimes they put off starting treatment, and sometimes they never start it at all. If we can offer a pill instead, I think we’ll be able to get more patients on effective therapy sooner.” 

That flexibility may be especially valuable for patients with established cardiovascular disease or HeFH who remain above guideline-recommended LDL targets despite maximally tolerated statins and ezetimibe. “We now have another way to lower LDL cholesterol without asking patients to make the jump to an injectable if they’re reluctant,” Watson said. 

Still, Watson cautions against assuming an oral formulation will automatically solve the adherence problem. “An oral medication has the potential to improve adherence for some patients because many people would rather take a pill than give themselves an injection,” she said. “But we have to remember another group of patients hates taking daily medications, so they will prefer an every 2-week injectable.” 

 Keith C. Ferdinand, MD, professor of medicine at the Tulane University School of Medicine and the Tulane Heart & Vascular Institute, shares that assessment. “Undertreatment is widespread and common,” Ferdinand told Inside Precision Medicine. “PCSK9 inhibitor uptake has been poor, but probably due to early access barriers and costs. But generic high-intensity statins, costing much less, are underutilized, and most ASCVD patients do not obtain a [cholesterol target of <70 mg/dL]. If an oral PCSK9 inhibitor has cost barriers, uptake will be poor and may not increase goal attainment.” 

For Ferdinand, introducing another effective drug is only part of the solution. Measuring whether clinicians actually achieve LDL targets may be equally important. “Oral PCSK9 inhibitors may be costly and underutilized,” he said. “A performance measure of goal attainment would have to overcome therapeutic inertia. Clinicians need a report card on their care and outcomes and respond to high LDL-C. Widespread coverage with easy prior authorization is key.” 

A new chapter for PCSK9—and precision medicine  

The arrival of the first oral PCSK9 inhibitor also comes as cardiovascular medicine enters another transformative era. Several investigational gene-editing therapies are designed to permanently disable PCSK9 after a single treatment, raising the possibility that lifelong cholesterol management could eventually become a one-time intervention. 

At first glance, the technologies appear to compete. Ballantyne sees them as addressing different clinical needs. “The numbers you’re seeing are on top of statin therapy,” he said. “Patients didn’t stop their statins—they received gene editing in addition to their daily medication.” That context changes the comparison. “If you’re still taking a pill every day,” Ballantyne said, “and you could instead take a pill that combines a statin with an oral PCSK9 inhibitor, that’s another way of thinking about the problem.” 

Rather than viewing oral therapy and gene editing as mutually exclusive, he expects cardiovascular prevention to evolve into a spectrum of treatment options. Most patients may continue using inexpensive oral medications, while one-time genetic interventions could eventually serve carefully selected populations for whom lifelong adherence is particularly challenging or extraordinarily high LDL levels warrant more aggressive intervention. Ballantyne believes the field will ultimately determine which patients benefit most from each approach based on durability, safety, cost, practicality, and patient preference rather than assuming a single technology will replace all others. 

After all, PCSK9 remains the target that human genetics first illuminated more than two decades ago. What is changing is how clinicians and patients may choose to intervene. “The more options we have, the better positioned we are to collaborate with our patients in finding treatment approaches that work and close gaps in care,” Ballantyne said. “If oral PCSK9 inhibitors help more patients initiate treatment, stay on therapy, and achieve guideline-recommended LDL-C levels, they can meaningfully improve cardiovascular disease prevention over the next several years and beyond.” 

Whether enlicitide ultimately becomes transformative will depend on factors extending well beyond medicinal chemistry. “This has the potential to be more than just another cholesterol-lowering drug,” Watson said. “Whether it becomes truly practice-changing will depend on several things: cost, access, and whether clinicians are comfortable incorporating it into routine care.” 

Watson expects the cardiovascular outcomes data to determine just how broadly clinicians embrace the therapy. “Given what we know about LDL-C as a causal driver of atherosclerotic cardiovascular disease and given the amount of LDL lowering this drug produces, I’d be surprised if we didn’t see cardiovascular benefit,” she said. “If those outcome data are positive, I think this could become another really valuable tool in our toolbox. I don’t see it replacing statins or ezetimibe, but I do see it helping many more high-risk patients actually reach their LDL goals.” 

For Ballantyne, however, the approval represents something even larger than another effective lipid-lowering therapy. “It’s a remarkable science story,” he said. “You start with human genetics, then monoclonal antibodies, then RNA therapies, now macrocyclic peptides. It’s another example of how understanding biology can lead to entirely new therapeutic approaches.” 

For patients who continue to struggle to reach recommended LDL targets despite existing therapies, that story has now produced something both novel and reassuringly familiar: a once-daily pill. 

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STAT+: Popular insulin product enters shortage as other pens leave market

People with diabetes who use a popular long-acting insulin pen made by Sanofi have had to become pharmacy scouts in recent weeks as they encounter supply issues.

The Lantus Solostar pen containing 3 milliliters of insulin glargine has been running low for several weeks because of increased demand “driven by broader market dynamics,” a Sanofi spokesperson told STAT. The issue is not technically considered a shortage by the Food and Drug Administration, but patients are nonetheless having trouble finding the medication.

“Our priority is ensuring patients have access to their medications,” the spokesperson said. “This is a temporary situation that we anticipate will improve over the coming weeks.”

Continue to STAT+ to read the full story…

“Physical Twins” of Human Arteries Predict Individual Stroke Risk 

Scientists in Australia have developed an artery-on-a-chip platform that can replicate a patient’s exact vascular structure to better assess their risk of ischemic stroke. Results published today in Cell Biomaterials show that differences in artery shape explain significant differences in stroke risk seen between patients with similar levels of artery narrowing. 

“Our findings suggested that three-dimensional vascular shape and local flow disturbances matter far more than simple narrowing,” said Yunduo Charles Zhao, graduate student at the University of Sydney and the Heart Research Institute in Newtown, Australia. “We hope these tools will allow us to study drugs aimed at reducing the risk of stroke and to eventually provide personalized treatments for each patient based on their anatomy.” 

Despite significant advances in imaging and management, stroke risk stratification is still very imprecise. Nearly 20% of patients receiving what is considered an optimal antiplatelet therapy continue to experience recurrent strokes, reflecting an incomplete understanding on how complex mechanical and biological factors determine whether clots grow, stabilize, or cause a stroke. 

“This idea was born out of a critical clinical gap,” said Lining Arnold Ju, PhD, associate professor at the University of Sydney in Australia and senior author of the study. “We know that even patients at ‘low risk’ can suffer from severe or fatal strokes. We wanted to find a better way to predict this risk.” 

Ju’s team used high-resolution 3D printing to create a “physical twin” that replicated the three-dimensional structure of the carotid artery from six patients who had previously experienced stroke of the carotid artery. To capture the full complexity of each patient’s unique physiology, the model also included the thrombogenic matrix and endothelium tissues, and simulated blood flow through the chip. 

“Our work recreates precise, patient-specific carotid artery geometries,” said Ju. “The physical twin also uses cells that more closely mimic the dynamics of blood flow in these structures.”

Using computer simulations, the researchers modeled blood flow through each carotid artery, uncovering substantial differences in local blood flow despite similar degrees of narrowing. They then used a laser to create an injury in the physical twins and study how blood clots formed, revealing that subtle differences in an artery’s shape could lead to strikingly different clotting responses. 

The researchers are currently recruiting patients with a stroke history for a clinical trial designed to evaluate the potential of this technology to improve diagnosis and treatment in underserved stroke patients. Down the line, the artery-on-a-chip physical twins could find applications in other cardiovascular conditions, such as peripheral artery disease, deep-vein thrombosis, and aneurysms. 

 

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STAT+: What is a ‘world model’? Nabla’s Alex LeBrun explains

You’re reading the web edition of STAT’s AI Prognosis newsletter, our subscriber-exclusive guide to artificial intelligence in health care and medicine. Sign up to get it delivered in your inbox every Wednesday. 

Every time I interview someone from an AI scribe company, I ask if it’s OK to record the interview for my notes and make a joke about the ironic situation.

Turns out, not everyone is asking, and people have started to record their daily conversations, such as first dates, without asking. “This Conversation is Being Recorded. They All Are” is the Wall Street Journal’s headline. What a hellscape.

Continue to STAT+ to read the full story…

New study supports testing of Merck’s Ebola vaccine in DRC outbreak

New data from a study in humans provides additional support to the idea that Merck’s Ebola vaccine Ervebo, licensed to target the Zaire species of ebolaviruses, could also offer some protection against another species currently circulating in a rapidly expanding outbreak in the Democratic Republic of the Congo.

The new paper, published Wednesday in the New England Journal of Medicine after previously having been posted online before peer review, is one of a growing number of studies pointing to the possibility that the vaccine could be used to target the Bundibugyo species of ebolaviruses. 

Read the rest…

New Target on Tumor Blood Vessels Could Expand Immunotherapy Responses

Immune checkpoint inhibitors have transformed cancer treatment, producing long-lasting—and sometimes curative—responses in patients with advanced malignancies. Yet only a minority of patients benefit, particularly those whose tumors have spread to the liver, where immunotherapy often proves less effective.

A new preclinical study from researchers at the German Cancer Research Center in Heidelberg suggests the answer may lie not within the cancer cells themselves, but in a specialized population of cells lining the tumor’s blood vessels. The findings, published in Cancer Research, identify lipoprotein lipase (LPL)-expressing tumor endothelial cells as critical regulators of T-cell infiltration into liver metastases and point to a new strategy for enhancing immunotherapy in tumors that are otherwise resistant to treatment.

The discovery builds on growing evidence that remodeling tumor blood vessels can improve immunotherapy. Anti-angiogenic agents such as bevacizumab, which targets the VEGF pathway, have already demonstrated clinical benefit when combined with immune checkpoint blockade. In the landmark IMbrave150 trial, atezolizumab plus bevacizumab significantly improved overall survival compared with sorafenib in patients with advanced hepatocellular carcinoma.

Despite that success, durable responses remain relatively uncommon. Approximately 30% of patients experienced an objective response to the combination therapy, while only about eight percent achieved a complete response. Those results suggest that targeting VEGF alone does not fully overcome the barriers preventing immune cells from reaching and attacking tumors.

To better understand those barriers, the investigators analyzed how blood vessel cells within and surrounding liver metastases responded over time after T-cell therapy. Their analyses uncovered a previously unrecognized subgroup of tumor endothelial cells that express LPL, an enzyme best known for its role in fat metabolism but not previously linked to antitumor immunity.

Rather than serving as passive conduits for blood flow, these endothelial cells actively orchestrated the immune response.

The researchers found that LPL-positive endothelial cells helped activated CD8-positive T cells leave the bloodstream and enter metastatic tumors. Once there, the T cells were able to recognize and destroy cancer cells, leading to regression of liver metastases in mouse models.

The study also revealed why these specialized blood vessel cells appear to be so important. Many cancers evade immune attack by reducing expression of major histocompatibility complex class I (MHC-I), the molecular display system that allows T cells to recognize tumor-derived proteins. Without adequate antigen presentation, even activated T cells struggle to identify malignant cells.

The authors found that LPL-positive endothelial cells compensate for this weakness. Instead of relying solely on tumor cells to present antigens, the endothelial cells themselves captured tumor proteins and displayed them through MHC-I, effectively providing T cells with the information needed to locate nearby cancer cells.

As the authors write, “LPL enhanced MHC-I-dependent cross-presentation of tumor antigens on tumor endothelial cells, thereby promoting T-cell infiltration.”

That interaction created a positive feedback loop. Once activated T cells recognized antigens displayed by the endothelial cells, they also targeted those blood vessel cells, further amplifying immune activity within the tumor microenvironment.

Genetic experiments reinforced the importance of the pathway. Increasing LPL expression specifically in endothelial cells enhanced T-cell infiltration into liver metastases, while eliminating LPL from those cells impaired immune cell recruitment and reduced the effectiveness of T-cell–mediated tumor control.

Importantly, the findings extended beyond animal models.

When the investigators examined human liver metastasis samples, they observed that tumors containing higher numbers of LPL-positive blood vessels also contained significantly more infiltrating T cells, suggesting that the mechanism may operate in patients as well.

The authors conclude that “LPL-positive tumor endothelial cells orchestrate activated CD8-positive T-cell homing into immunologically cold tumors with low baseline MHC-I expression.”

The work also helps explain why vascular-targeted therapies benefit only a subset of patients receiving immunotherapy. Previous research has largely focused on normalizing abnormal tumor blood vessels or increasing expression of molecules that help immune cells adhere to vessel walls. While those approaches improve immune cell access, they do not address another fundamental obstacle: many tumors simply fail to present enough antigens for T cells to recognize.

By acting as surrogate antigen-presenting cells, LPL-positive endothelial cells appear capable of overcoming that limitation, enabling T cells to infiltrate tumors that would otherwise remain immunologically “cold.”

The findings suggest that future combination strategies may need to extend beyond VEGF inhibition and instead directly promote the immune-supporting functions of tumor blood vessels.

Although additional studies will be needed to determine whether therapies can safely increase LPL activity in patients, the work identifies the protein as both a potential biomarker and a therapeutic target. Measuring LPL-positive blood vessels could help identify patients most likely to benefit from immunotherapy combinations, while therapies that enhance this endothelial cell program could potentially expand responses among patients whose tumors currently resist immune attack.

As the authors conclude, enhancing antigen presentation by tumor endothelial cells “presents a promising approach to compensate the intrinsic inability of tumor cells and boost antitumor immunotherapy,” offering a potential new avenue for turning immunologically cold liver metastases into tumors that respond to immune-based treatment.

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